arcasHLA is a tool for in silico inference of HLA genotypes (MHC class 1 and class 2) from RNA-seq.
Randomly is a python package for denoising single cell data with random matrix theory.
Pancancer is a web app to explore genetic alterations in TCGA (The Cancer Genome Atlas) using Topological Data Analysis.
Primate Marburg Infection Gene Expression Explorer is a web app for exploring the gene expression of primates infected with Marburg virus.
Pegasus is a tool for the annotation and prediction of oncogenic gene fusions in RNAseq.
GAMToC uses copy number and mutation data from a cohort of patients, for example from TCGA, to find modules of genes with a related mutation pattern.
scTDA is an object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data.
TARGet is a light-weight application for reconstructing non-vertical evolutionary histories from sampled genetic sequences using persistent homology, a tool from topological data analysis.
Motor Neurons scTDA is a GUI to browse the results of single-cell topological data analysis (scTDA) of motor neuron differentiation.